Variola virus

Variola virus is the causative agent of smallpox, a formerly widespread and dangerous disease in humans. The virus is large and brick-shaped and is approximately 330 nanometers by 260 nm, with a single linear double stranded DNA genome 186 kilobase pairs (kbp) in size and containing a hairpin loop at each end. It infects only humans in nature. Both enveloped and unenveloped virions are infectious. Infection with either the major or minor strain confers immunity against the other. Variola major, the more common of the two strains, caused the more clinically severe illness and accounted for the great majority of smallpox's historical mortality. The genome of variola major virus is about 186,000 base pairs in length. It is made from linear double stranded DNA and contains the coding sequence for about 200 genes. The center of the genome contains the majority of the essential viral genes, including for structural proteins, DNA replication, transcription, and mRNA synthesis. The ends of the genome vary more across strains and species of orthopoxviruses. These regions contain proteins that modulate the hosts' immune systems, and are primarily responsible for the variability in virulence across the orthopoxvirus family. Gene expression occurs entirely within the cytoplasm of the host cell, and follows a distinct progression during infection. About half of the viral genome is transcribed prior to the replication of viral DNA. The first set of expressed genes are transcribed by pre-existing viral machinery packaged within the infecting virion. These genes encode the factors necessary for viral DNA synthesis and for transcription of the next set of expressed genes. DNA replication in variola virus takes place within the cytoplasm of the infected cell. Recombination of the genome occurs within actively infected cells. The products include transcription factors for transcribing genes for new virions, as well as viral...